M. Robertson-Tessi, J. Brown, M. Poole, M. Johnson, A. Marusyk, J. Gallaher, K. Luddy, C. Whelan, J. West, M. Strobl, V. Turati, H. Enderling, M. Schell, A. Tan, T. Boyle, R. Makanji, J. Farinhas, H. Soliman, D. Lemanne, R. Gatenby, D. Reed, A. Anderson, C. Chung, 2023, "Feasibility of an Evolutionary Tumor Board for Generating Novel Personalized Therapeutic Strategies." Link to preprint. Download the PDF.

J. West, F. Adler, J. Gallaher, M. Strobl, R. Brady-Nicholls, J. Brown, M. Robertson-Tessi, E. Kim, R. Noble, Y. Viossat, D. Basanta, A. Anderson, 2022, "A survey of open questions in adaptive therapy: bridging mathematics and clinical translation." Link to preprint. Download the PDF.

J. Gallaher, M. Strobl, J. West, J. Zhang, R. Gatenby, M. Robertson-Tessi, A. Anderson, 2022, "The sum and the parts: dynamics of multiple and individual metastases during adaptive therapy." Link to preprint. Download the PDF.

J. West, F. Rentzeperis, C. Adam, R. Bravo, K. Luddy, M. Robertson-Tessi, A. Anderson, 2022, "Tumor-immune metaphenotypes orchestrate an evolutionary bottleneck that promotes metabolic transformation." Link to preprint. Download the PDF.

G. Kimmel, J. West, M. Damaghi, A. Anderson, P. Altrock, 2022, "Local contact inhibition leads to universal principles of cell population growth." Link to preprint. Download the PDF.

J. West, B. Desai, M. Strobl, L. Pierik, R. Vander Velde, C. Armagost, R. Miles, M. Robertson-Tessi, A. Marusyk, A. Anderson, 2020, "Antifragile Therapy." Link to preprint. Download the PDF.

C. Gatenbee, J. West, M. Robertson-Tessi, A. Baker, N. Guljar, T. Graham, A. Anderson, 2018, "Macrophage-mediated immunoediting drives ductal carcinoma evolution: Space is the game changer." Link to preprint. Download the PDF.

N. Taleb, J. West, 2023, "Working With Convex Responses: Antifragility From Finance to Oncology." Entropy. Link to publication. Link to preprint.

J. West, M. Robertson-Tessi, A. Anderon, 2022, "Agent-based methods facilitate integrative science in cancer." Trends in Cell Biology. Link to publication.

R. Schenck, E. Kim, R. Bravo, J. West, S. Leedham, D. Shibata, A. Anderson, 2022, "Homeostasis limits keratinocyte evolution." Proceedings of the National Academy of Sciences. Link to publication.

S. Prabhakaran, C. Gatenbee, M. Robertson-Tessi, J. West, A. Beg, J. Gray, S. Antonia, R. Gatenby, A. Anderson, 2022, "Mistic: an open-source multiplexed image t-SNE viewer." Patterns. Link to publication. Link to preprint.

M. Strobl, J. Gallaher, J. West, M. Robertson-Tessi, P. Maini, A. Anderson, 2022, "Spatial structure impacts adaptive therapy by shaping intra-tumoral competition." Communications Medicine. Link to publication.

C. Gatenbee, A. Baker, R. Schenck, M. Strobl, J. West, M. Neves, S. Hasan, E. Lakatos, P. Martinez, W. Cross, M. Jansen, M. Rodriguez-Justo, C. Whelan, A. Sottoriva, S. Leedham, M. Robertson-Tessi, T. Graham, A. Anderson, 2022, "Immunosuppressive niche engineering at the onset of human colorectal cancer." Nature Communications. Link to publication.

R. Schenck, G. Brosula, J. West, S. Leedham, D. Shibata, A. Anderson, 2022, "Gattaca: Base pair resolution mutation tracking for somatic evolution studies using agent-based models." Molecular Biology and Evolution. Link to publication.

J. West, R. Schenck, C. Gatenbee, M. Roberston-Tessi, A. Anderson, 2021, "Normal tissue architecture determines the evolutionary course of cancer." Nature Communications. Link to publication.

M. Strobl, J. West, Y. Viossat, M. Damaghi, M. Robertson-Tessi, J. Brown, R. Gatenby, P. Maini, A. Anderson, 2021, "Turnover modulates the need for a cost of resistance in adaptive therapy." Cancer Research. Link to publication.

M. Damaghi, J. West, M. Robertson-Tessi, Liping Xu, M. Ferrall-Fairbanks, P. Stewart, E. Persi, B. Fridley, P. Altrock, R. Gatenby, P. Sims, A. Anderson, R. Gillies, 2021, "The harsh microenvironment in early breast cancer selects for a Warburg phenotype." Proceedings of the National Academy of Sciences. Link to publication. Link to preprint.

J. West, Yongqian Ma, Artem Kaznatcheev, A. Anderson, 2020, "IsoMaTrix: a framework to visualize the isoclines of matrix games and quantify uncertainty in structured populations." Bioinformatics. Link to publication.

J. West, L. You, J. Zhang, R.A. Gatenby, J. Brown, P.K. Newton, A. Anderson, 2020, "Towards multi-drug adaptive therapy." Cancer Research. Link to publication.

R. Bravo, E. Baratchart, J. West, R. Schenck, A. Miller, J. Gallaher, C. Gatenbee, D. Basanta, M. Robertson-Tessi, A. Anderson, 2020, "Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization." PLOS Computational Biology. Link to publication.

J. West, M. Dinh, J. Brown, J. Zhang, A. Anderson, R. Gatenby, 2019, "Multidrug cancer therapy in metastatic castrate-resistant prostate cancer: An evolution-based strategy." Clinical Cancer Research. Link to publication.

J. West, M. Robertson-Tessi, K. Luddy, D. Park, D. Williamson, C. Harmon, H. Khong, J. Brown, A. Anderson, 2019, "The immune checkpoint kick start: Optimization of neoadjuvant combination therapy using game theory." Journal of Clinical Oncology: Clinical Cancer Informatics. Link to publication. Link to preprint.

J. West, P. Newton, 2019, "Cellular interactions constrain tumor growth." Proceedings of the National Academy of Sciences. Link to publication.

J. West, Y. Ma, P.K. Newton, 2018, "Capitalizing on Competition: An Evolutionary Model of Competitive Release in Metastatic Castrate Resistant Prostate Cancer Treatment." Journal of Theoretical Biology. Link to publication.

J. West, P. Newton, 2017, "Chemotherapeutic dose scheduling based on tumor growth rates provides a case for low-dose metronomic high-entropy therapies." Cancer Research. Link to publication. Link to preprint.

J. West, Z. Hasnain, J. Mason, P. Newton, 2016, "The prisoner's dilemma as a cancer model." Convergent Science: Physical Oncology. Link to publication.

J. West, Z. Hasnain, P. Newton, 2016, "An evolutionary model of tumor cell kinetics and the emergence of molecular heterogeneity driving Gompertzian growth." SIAM Review. Link to publication.

J. Yoder, J. West, E. Baumgartner, M. Perrollaz, M. Seelinger, M. Robinson, 2013, "Experiments comparing precision of stereo-vision approaches for control of an industrial manipulator." Spring Tracts in Advanced Robotics. Link to publication.

J. West, D. Park, C. Harmon, D. Williamson, P. Ashcroft, D. Maestrini, A. Ardaseva, R. Bravo, P. Sahoo, H. Khong, K. Luddy, M. Robertson-Tessi, 2018, "Evolutionary exploitation of PD-L1 expression in hormone receptor positive breast cancer." . Link to paper. Download the PDF.

J. West, P. Newton, 2018, "Optimizing chemo-scheduling based on tumor growth rates." Mathematical Oncology Handbook. Link to paper. Download the PDF.

Y. Ma, J. West, P. Newton, 2018, "Competitive release in tumors." Mathematical Oncology Handbook. Link to paper. Download the PDF.

E. Kim, R. Schenck, J. West, W. Cross, V. Harris, J. McKenna, H. Cho, E. Coker, S. Lee-Kramer, K. Tsai, E. Flores, C. Gatenbee, 2017, "Targeting the Untargetable: Predicting Pramlintide Resistance Using a Neural Network Based Cellular Automata." . Link to paper. Download the PDF.

Y. Ma, J. West, P. Newton, 2012, "A Fuzzy Logic approach to collision avoidance in smart UAVs." Technical Report #CSSE12-05, Auburn University. Link to paper. Download the PDF.

J. West, P. Ling, P. Grewal, 2010, "Urban Food Production season extension techniques." Internship Program (ORIP) Technical Report. Link to paper. Download the PDF.